PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g026433m | ||||||||
Common Name | CISIN_1g024771mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 239aa MW: 26344.2 Da PI: 10.2765 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.4 | 2.3e-19 | 155 | 189 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ kTp+WR gp g+ktLCnaCG+++++ +l orange1.1g026433m 155 CQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRL 189 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 8.5E-17 | 149 | 199 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.78 | 152 | 185 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.5E-15 | 152 | 212 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.2E-15 | 153 | 187 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.11E-13 | 154 | 202 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 155 | 180 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.4E-17 | 155 | 189 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MVQKTVLPFL KINSGRAFVE FNVQVSLFFL AVSHEECAEE ELEWLSNFPT VETFVDISSN 60 PNILKQQSPN SVLENSNSSS STSTNGSTIT NGNNNSNSII MNCCGNLRVP VRARSKLRTR 120 CRRELLNQEA WWGSVHGSVK AAKPVVSKVI IGRKCQHCGA EKTPQWRAGP MGPKTLCNAC 180 GVRFKSGRLV PEYRPANSPT FSSELHSNSH RKVVEMRRQK QMMGIELGVL GVKPVDKG* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Csi.2473 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269|PubMed:12139008}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024038779.1 | 1e-174 | GATA transcription factor 1 isoform X2 | ||||
Swissprot | Q8LAU9 | 9e-53 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | A0A067DTZ7 | 1e-174 | A0A067DTZ7_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NQS1 | 1e-174 | A0A2H5NQS1_CITUN; Uncharacterized protein | ||||
STRING | XP_006492137.1 | 1e-147 | (Citrus sinensis) | ||||
STRING | XP_006420528.1 | 1e-147 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24050.1 | 1e-46 | GATA transcription factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g026433m |