PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026394m
Common NameCISIN_1g023215mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 240aa    MW: 25887.8 Da    PI: 6.7718
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026394mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.81.4e-06189214630
                        HHHHHHHHHHHHHHHHHHHCTSCC.C CS
                HLH   6 nerErrRRdriNsafeeLrellPk.a 30 
                        +++Er RR ri +++ +L++l+P+ +
  orange1.1g026394m 189 SIAERVRRTRISDRIRKLQDLVPNmD 214
                        689********************944 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.842183239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-6186215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.10E-4187217No hitNo description
Gene3DG3DSA:4.10.280.101.9E-5188214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MQPTAGGSSS SSGGGGGGVG GRGELSRGGL ARLRSAPASW IDALLEEELE DPLKPNQCLT  60
QLLSSGDPVS VTAGLSLSQS QLDQVGFQRQ NSSPADLFDG YFSNYATPSS YDYVDVSPNS  120
NKRAREDNNT QFPSPTAKLN FHSHLKVEQS GQVPGGVSNL VDMDMEKLLE DSVPCRVRAK  180
RGCATHPRSI AERVRRTRIS DRIRKLQDLV PNMDKVRLVI SSFQTNETWD CFLVSSVTI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.79660.0callus| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473253.11e-157transcription factor bHLH80 isoform X2
RefseqXP_024952054.11e-157transcription factor bHLH81 isoform X1
RefseqXP_024952055.11e-158transcription factor bHLH81 isoform X3
SwissprotQ9C8P81e-59BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A067GWL31e-175A0A067GWL3_CITSI; Uncharacterized protein
STRINGXP_006473253.11e-157(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.17e-45bHLH family protein