PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g026390m | ||||||||
Common Name | CISIN_1g023847mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 25731.6 Da PI: 6.1493 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.5 | 7.4e-11 | 157 | 204 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq orange1.1g026390m 157 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 204 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.66E-18 | 151 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.89E-10 | 151 | 208 | No hit | No description |
PROSITE profile | PS50888 | 15.828 | 153 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-18 | 153 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-8 | 157 | 204 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-10 | 159 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDPPLVNESS FSAANPSSYS LAEIWPFPIN NGGAGDAGLR MGNMGHGFGE SSALRDGSME 60 ESTVTEQSGG GCGRKRRDLS SEDESSKIVS TTSSANDLND SNGKWMKTSG SKNENGSKAE 120 VEASSAAGNK PAESSKPSEP PKDYIHVRAR RGQATDSHSL AERARREKIS ERMKILQDLV 180 PGCNKVIGKA LVLDEIINYI QSLQRQVEFL SMKLEAVNSR MNLTPTIEGF HPKDVSLSI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.887 | 0.0 | callus| flower| fruit| vegetative meristem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006439701.1 | 1e-172 | transcription factor bHLH79 | ||||
Swissprot | Q9LV17 | 5e-83 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | A0A067G2D3 | 1e-175 | A0A067G2D3_CITSI; Uncharacterized protein | ||||
STRING | XP_006439701.1 | 1e-171 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62610.1 | 2e-69 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g026390m |
Publications ? help Back to Top | |||
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