PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g026325m | ||||||||
Common Name | CISIN_1g026325mg, LOC102631427 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 241aa MW: 26760 Da PI: 7.9268 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62 | 8.7e-20 | 87 | 141 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq + Lee F+ n++++ +++eeLA++l+L+ rqV vWFqNrRa+ k orange1.1g026325m 87 RKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSK 141 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 119.1 | 2.4e-38 | 87 | 175 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq++lLEesF+++++L+p++K+ela++L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+ orange1.1g026325m 87 RKKLRLSKEQSRLLEESFRHNHTLNPKQKEELATQLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 175 69*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.6E-20 | 70 | 144 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.7E-19 | 72 | 137 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.621 | 83 | 143 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-18 | 85 | 147 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.96E-18 | 86 | 144 | No hit | No description |
Pfam | PF00046 | 4.7E-17 | 87 | 141 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 118 | 141 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 7.9E-10 | 143 | 177 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 4.4E-22 | 143 | 186 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MAIIPRSSSS LDLTISVPGF SSSDDGDHHH HQQQAGGSAM KDLDINQVPS EDTEWNNWNT 60 ATATTTGSGS MDDEEESCIN VDGGPPRKKL RLSKEQSRLL EESFRHNHTL NPKQKEELAT 120 QLKLKPRQVE VWFQNRRARS KLKQTEMECE YLKRWFGSLT EQNRRLQREV EELRAMKVGP 180 PTVISPHSCE PLPASTLSMC PRCERVTTTA IDKGPTKVTT ASSTPAALSP KVGTPALQSR 240 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 143 | RRARSKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.7860 | 0.0 | flower| vegetative meristem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006448268.1 | 1e-179 | homeobox-leucine zipper protein HOX3 | ||||
Refseq | XP_006469169.1 | 1e-179 | homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q0JKX1 | 6e-80 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 6e-80 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A067FF13 | 1e-178 | A0A067FF13_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PQR8 | 1e-178 | A0A2H5PQR8_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TLZ8 | 1e-178 | V4TLZ8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006469169.1 | 1e-179 | (Citrus sinensis) | ||||
STRING | XP_006448268.1 | 1e-179 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4890 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 4e-75 | homeobox-leucine zipper protein 17 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g026325m |
Entrez Gene | 102631427 |