PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026259m
Common NameCISIN_1g021481mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 242aa    MW: 26392.1 Da    PI: 6.5144
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026259mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like34.54.5e-111233355
            G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55
                       +++m+vkgLtl+h+kSHLQkYRl
  orange1.1g026259m  1 MRTMGVKGLTLYHLKSHLQKYRL 23
                       689*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-10124IPR009057Homeodomain-like
PfamPF143795.2E-2773119IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MRTMGVKGLT LYHLKSHLQK YRLGKQACKE TTENSKDDYV ALEVSCVAES QDTGSSTTSS  60
TRMVAQDPND GYQVTEALRV QMEVQRRLHE QLEVQRRLQL RIEAQGKYLQ SILEKACKAL  120
NDQAIVAAGL EAAREELSEL AIKVSNDCQG MVPLENIKMP SISELAAALE SKNASTIPAR  180
IGDCSVESCL TSTSSPVSPM GLGSQAAAMK KRPRPLFGNG ESLPLEGNMR QEVEWVMPHI  240
G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210214KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006493810.11e-163protein PHR1-LIKE 3 isoform X2
SwissprotQ8LAJ79e-97PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLA0A067FDD41e-177A0A067FDD4_CITSI; Uncharacterized protein
STRINGXP_006420903.11e-162(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.19e-82G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]