PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g025998m | ||||||||
Common Name | CISIN_1g025998mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Dof | ||||||||
Protein Properties | Length: 246aa MW: 27535.3 Da PI: 4.6557 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.9 | 9.3e-38 | 11 | 69 | 4 | 62 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +a +cprC s ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn +++ orange1.1g025998m 11 TAPSCPRCASPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNGRAK 69 5678**************************************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-28 | 1 | 67 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.5E-31 | 13 | 66 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.295 | 13 | 67 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 15 | 51 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MEKKWKPDVE TAPSCPRCAS PNTKFCYYNN YSLSQPRYFC KGCRRYWTKG GSLRNVPVGG 60 GCRKNGRAKS SRRKSPFNND RPKASCSSDH TDDAVSTPNG GSDIDLAVVF ANSSTPDNVV 120 QNDDFNVHNV MGNGDLNILG EFPQVFGQLQ EEEDRRVQDF LEDDMVNAHG LQALLGDEIV 180 DHQVALWSDQ AETETLPNFT WQRAMFQLQD FDSFPADDQL KASANLISDN WTSFDLPGFE 240 LYSRP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434423.2 | 1e-179 | dof zinc finger protein DOF1.2 | ||||
Swissprot | P68349 | 9e-44 | DOF12_ARATH; Dof zinc finger protein DOF1.2 | ||||
TrEMBL | A0A067H7W4 | 0.0 | A0A067H7W4_CITSI; Uncharacterized protein | ||||
STRING | XP_006434423.1 | 1e-178 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6462 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21340.1 | 4e-46 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g025998m |