PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g025894m | ||||||||
Common Name | CISIN_1g025894mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | SRS | ||||||||
Protein Properties | Length: 247aa MW: 27309.2 Da PI: 6.9762 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 81.7 | 1.9e-25 | 87 | 142 | 6 | 61 |
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaass 61 +C+dCGn+ak++C+++RCRtCCk+r fdC+thv+stWvpaakrr++++ + ss orange1.1g025894m 87 RACRDCGNRAKRECSFRRCRTCCKTRRFDCTTHVRSTWVPAAKRRQKKKLITGGSS 142 58********************************************9887766554 PP | |||||||
2 | DUF702 | 70.1 | 7e-22 | 137 | 214 | 80 | 154 |
DUF702 80 skkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgee...elaYqtavsigGhvfkGiLydqGlee 154 ++ s++s + ++a+ + e+ ++slP +v+++avfrc++v++v+dg++ e++Y ++v+i+GhvfkG+Lyd G++e orange1.1g025894m 137 ITGGSSSSLSFSTTASCQDESFKKSLPGKVQAPAVFRCIKVTAVSDGDDnkaEVGYVATVNISGHVFKGFLYDLGIDE 214 3333333333333444455566677*******************88654222799********************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.1E-22 | 87 | 137 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 5.4E-23 | 89 | 130 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Pfam | PF05142 | 1.1E-18 | 149 | 213 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 1.8E-23 | 162 | 212 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MDTTNRSGPL ISMLNLHDII FAAPPPQPPR ISSDLHHQDD DDDDNDRNTS NLHKIGFWGL 60 KKWQEESHTD VEDDSDDHDG DHSGLMRACR DCGNRAKREC SFRRCRTCCK TRRFDCTTHV 120 RSTWVPAAKR RQKKKLITGG SSSSLSFSTT ASCQDESFKK SLPGKVQAPA VFRCIKVTAV 180 SDGDDNKAEV GYVATVNISG HVFKGFLYDL GIDEKKLFPW DSSGRENKES SPPNVDSSNA 240 DATSGN* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432447.2 | 1e-174 | protein SHI RELATED SEQUENCE 6 | ||||
TrEMBL | A0A067EUM3 | 0.0 | A0A067EUM3_CITSI; Uncharacterized protein | ||||
STRING | XP_006494070.1 | 1e-138 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11959 | 23 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54430.1 | 9e-32 | SHI-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g025894m |