PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g025886m
Common NameCISIN_1g025886mg, LOC102614503
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 248aa    MW: 28729 Da    PI: 4.6953
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g025886mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.64.9e-193286256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       +++++f++eq++ Le +Fe++  +  +++ +LAk+lgL+ rqV +WFqN+Ra++k
  orange1.1g025886m 32 KNKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWK 86
                       56779*************************************************9 PP
2HD-ZIP_I/II117.95.6e-3833124293
        HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                        +krr+s+eq+++LE +Fe+e++Lep++K +la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L++++++l+++ e+L+ke+++L  +l++
  orange1.1g025886m  33 NKRRFSDEQIRSLELMFENETRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYNILQANFNNLASRFEALKKEKQALVIQLQK 124
                        79************************************************************************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.08E-191290IPR009057Homeodomain-like
PROSITE profilePS5007117.752888IPR001356Homeobox domain
SMARTSM003891.0E-163092IPR001356Homeobox domain
PfamPF000462.3E-163286IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.2E-193395IPR009057Homeodomain-like
CDDcd000864.44E-143789No hitNo description
PRINTSPR000319.1E-65968IPR000047Helix-turn-helix motif
PROSITE patternPS0002706386IPR017970Homeobox, conserved site
PRINTSPR000319.1E-66884IPR000047Helix-turn-helix motif
PfamPF021839.1E-1588130IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MLDGGEYSPA AEPYSCMNEI TTTTTTRKKK CKNKRRFSDE QIRSLELMFE NETRLEPRKK  60
LQLAKELGLQ PRQVAIWFQN KRARWKSKQL ERDYNILQAN FNNLASRFEA LKKEKQALVI  120
QLQKTNELLQ NKPRREDQSP SERQCCGQVE GVNSMESELD NGDRDTNKCE SEVKPSLSAE  180
LRLGVLSDDD SSIKTEYFGL HEDEPNLMTM VEPAESSMTS PEDWGNFESD GLFDQSSSEY  240
QWWDFWS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444770.10.0homeobox-leucine zipper protein ATHB-7
RefseqXP_006491341.10.0homeobox-leucine zipper protein ATHB-7
SwissprotP468979e-80ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A067HEZ90.0A0A067HEZ9_CITSI; Uncharacterized protein
TrEMBLA0A2H5P0830.0A0A2H5P083_CITUN; Uncharacterized protein
TrEMBLV4U1T10.0V4U1T1_9ROSI; Uncharacterized protein
STRINGXP_006491341.10.0(Citrus sinensis)
STRINGXP_006444770.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-78homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]