PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g025667m | ||||||||
Common Name | CISIN_1g021910mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 250aa MW: 28617.3 Da PI: 8.7044 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.5 | 8.1e-30 | 5 | 76 | 54 | 127 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ + ++ g+kk Lvfy g+apkg kt+W+mheyr orange1.1g025667m 5 GEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGK--PKTLGIKKALVFYAGKAPKGIKTNWIMHEYR 76 689************************************98..778***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.906 | 1 | 103 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-35 | 3 | 103 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-14 | 9 | 76 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MARYGEKEWY FFSPRDRKYP NGSRPNRAAG SGYWKATGAD KPIGKPKTLG IKKALVFYAG 60 KAPKGIKTNW IMHEYRPANV HRSPATKNNL RLDDWVLCRL YNKKGRMEKH YPSDQKSIGF 120 PELEEDRKPN INISRQEVAL GMPPHQGSPV PMMNDLLNMD TSDSVPRLQT DSSCSEHVLS 180 PEIACDKEVQ SVPKWNDLGN ALNDDYNQFS FNYMDTNSFQ DDPFGPQVQY QMDQLSPYQD 240 LFMILQKPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-48 | 2 | 109 | 64 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.8323 | 0.0 | flower| fruit |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF596736 | 0.0 | EF596736.1 Citrus sinensis NAC domain protein (NAC) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432090.1 | 0.0 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-85 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A067EAN2 | 0.0 | A0A067EAN2_CITSI; Uncharacterized protein | ||||
STRING | XP_006464926.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006432090.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 6e-88 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g025667m |