PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g025623m | ||||||||
Common Name | CISIN_1g025623mg, LOC102621393 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 251aa MW: 28865.5 Da PI: 5.1442 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.5 | 1.7e-26 | 82 | 172 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eYAk++GF++r+++ ++s +n i+ r+fvCs+eg+r+ ++ +++ +r++tr gCka++++ ++ gkw vtk++ eHnH+l orange1.1g025623m 82 DFYYEYAKRTGFTIRTNRIRHSLKNMAIIGRDFVCSREGFRAAKHALrKDRVLPPRPVTREGCKAMIRLAARDGGKWAVTKFVREHNHKLL 172 6*****************************************9998823333449**********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.6E-24 | 82 | 172 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MACSAGHEFI DGEGCSDNDT LENFDEHDTT EDGLLQHYDS HDVINDELNV VIPSMEGFTA 60 DSSESLEPYM GMTFPSLEDA RDFYYEYAKR TGFTIRTNRI RHSLKNMAII GRDFVCSREG 120 FRAAKHALRK DRVLPPRPVT REGCKAMIRL AARDGGKWAV TKFVREHNHK LLTHCKFPGE 180 LPIVNILSEE EKDKKIRDLY NELQRERERS AAIQQQLRLI LKDLEEHAEI MSIRVEDIVN 240 SLREIELDEL * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006478703.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Refseq | XP_024044852.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Refseq | XP_024044853.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A067E5U0 | 0.0 | A0A067E5U0_CITSI; Uncharacterized protein | ||||
TrEMBL | V4T7M3 | 0.0 | V4T7M3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006478703.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006443023.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16776 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 9e-46 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g025623m |
Entrez Gene | 102621393 |