PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g025570m

Common Name

CISIN_1g023996mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 251aa MW: 28382.5 Da PI: 5.7689

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g025570m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	21.9	4.6e-07	4	28	1	25
NAM 1 lppGfrFhPtdeelvveyLkkkveg 25 lppG+rF Pt+eelv++yL +k+e+ orange1.1g025570m 4 LPPGYRFFPTEEELVSFYLINKLEE 28 79*******************9975 PP
2	NAM	89.4	6.3e-28	33	111	50	128
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+++++++w+fF++r++++++g r++r+t+sgyWkatg+ v+s++++++g+kkt+vfykg+ap+g+kt+W mheyr+ orange1.1g025570m 33 KCQGDTEQWFFFTPRQEREERGGRPSRTTASGYWKATGSPSYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMHEYRA 111 5667788**********************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	33.118	1	138	IPR003441	NAC domain
SuperFamily	SSF101941	1.96E-41	3	138	IPR003441	NAC domain
Pfam	PF02365	4.3E-24	5	110	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MEELPPGYRF FPTEEELVSF YLINKLEELC GEKCQGDTEQ WFFFTPRQER EERGGRPSRT 60 TASGYWKATG SPSYVYSSDN RVIGVKKTMV FYKGKAPTGR KTKWKMHEYR AIEGASNPSS 120 AVIPKLRHEF SLCRIYVKSE SFRAFDRRPL EAARREEQPH GGGATTSAPN NIMVRGNGSN 180 TSFQDAIMCD GDVATTSAQN NIMGPRASSP ETSYSGEDHS DYPETNLDNN WNIVADPQPP 240 LWDWEQLNWP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-30	4	141	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-30	4	141	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-30	4	141	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-30	4	141	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	2e-30	4	141	20	171	NAC domain-containing protein 19
3swm_B	2e-30	4	141	20	171	NAC domain-containing protein 19
3swm_C	2e-30	4	141	20	171	NAC domain-containing protein 19
3swm_D	2e-30	4	141	20	171	NAC domain-containing protein 19
3swp_A	2e-30	4	141	20	171	NAC domain-containing protein 19
3swp_B	2e-30	4	141	20	171	NAC domain-containing protein 19
3swp_C	2e-30	4	141	20	171	NAC domain-containing protein 19
3swp_D	2e-30	4	141	20	171	NAC domain-containing protein 19
4dul_A	2e-30	4	141	17	168	NAC domain-containing protein 19
4dul_B	2e-30	4	141	17	168	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.8158	0.0	flower

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006424205.1	0.0	NAC domain-containing protein 90 isoform X2
Swissprot	Q9FMR3	5e-74	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A067ESP6	0.0	A0A067ESP6_CITSI; Uncharacterized protein
STRING	XP_006424204.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	1e-71	NAC domain containing protein 61

Link Out ? help Back to Top
Phytozome	orange1.1g025570m

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]