PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g025477m | ||||||||
Common Name | CISIN_1g025477mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 28838 Da PI: 7.8958 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.5 | 2.8e-14 | 66 | 117 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + hn+ Er RR++iNs ++ Lr+llP a + kKls +++ ++ +YI +Lq orange1.1g025477m 66 KLYHNASERDRRKKINSLYSSLRSLLPVA--DQTKKLSIPATVSRVLKYIPELQ 117 567*************************6..48888***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.802 | 64 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.62E-5 | 65 | 121 | No hit | No description |
SuperFamily | SSF47459 | 3.66E-16 | 65 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.3E-14 | 66 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-11 | 66 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.7E-11 | 70 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MCALFPPFFP SLGWPLEINP ICHQQDYITE TIEESPQFPQ ESEPQAEFDR SASFSANSGD 60 PTMVKKLYHN ASERDRRKKI NSLYSSLRSL LPVADQTKKL SIPATVSRVL KYIPELQQQV 120 ERLMQKKEEL LSKISKPGEI SHQQHQRKIA IGSSLASISA SRLSDMEILI QISSYKVHKC 180 PLSKILFNLE EDGLVLVNAS FFESFQGRVF YNLHLQVKST YGLDCEVLNE KLKSFYNEKR 240 EDLFPSNFGC KN* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006494391.2 | 0.0 | transcription factor ORG2 | ||||
TrEMBL | A0A067DMC3 | 0.0 | A0A067DMC3_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5QLA5 | 0.0 | A0A2H5QLA5_CITUN; Uncharacterized protein | ||||
STRING | XP_006494391.1 | 1e-121 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM482 | 28 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 1e-57 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g025477m |