PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g025411m | ||||||||
Common Name | CISIN_1g022728mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GATA | ||||||||
Protein Properties | Length: 254aa MW: 28000.1 Da PI: 6.4212 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.4 | 6.4e-16 | 215 | 249 | 1 | 33 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 C++Cg ++ Tp++Rrgp+g++tLCnaCGl+++ k orange1.1g025411m 215 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANK 249 *****99999**********************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.633 | 71 | 106 | IPR010399 | Tify domain |
SMART | SM00979 | 6.8E-11 | 71 | 106 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.8E-12 | 77 | 105 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.106 | 139 | 181 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.2E-15 | 139 | 181 | IPR010402 | CCT domain |
SMART | SM00401 | 1.1E-5 | 209 | 251 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.19E-10 | 210 | 249 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 4.2E-14 | 213 | 249 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.11E-12 | 214 | 249 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 215 | 242 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 8.7E-14 | 215 | 249 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDHGSNPQMQ MSDEQHAIHH VNYVPEHELH HISNGDVMDD EHDEGNGVGE SEAMEGDAPS 60 DPGSLSDNRA VSEIGDQLTL SFQGQVYVFD SVSPEKVQAV LLLLGGREVP STTPAIPIAN 120 NQNNRGLPGT PQRLSVPQRL ASLIRFREKR KERNFEKKIR YTVRKEVALR MQRNKGQFTS 180 AKSNNEDSAS AISSWGSNQS WAGDVNGSQN QDIVCRHCGI SEKSTPMMRR GPEGPRTLCN 240 ACGLMWANKV REL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.5408 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00198 | DAP | Transfer from AT1G51600 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006465167.1 | 0.0 | GATA transcription factor 28 isoform X1 | ||||
Refseq | XP_006465168.1 | 0.0 | GATA transcription factor 28 isoform X1 | ||||
Refseq | XP_024955227.1 | 0.0 | GATA transcription factor 28 isoform X1 | ||||
Swissprot | Q8H1G0 | 1e-118 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | A0A067DS24 | 0.0 | A0A067DS24_CITSI; Uncharacterized protein | ||||
STRING | XP_006465167.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 1e-106 | ZIM-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g025411m |