PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g025156m

Common Name

CISIN_1g023190mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 258aa MW: 29153.8 Da PI: 8.0079

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g025156m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.5	4.8e-31	14	86	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfF++rd+ky++g+r+nra+ sgyWkatg dk++ + + vg+kk Lvfy g+apkgekt+W+mheyrl orange1.1g025156m 14 GEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPIGQ--PKPVGIKKALVFYAGKAPKGEKTNWIMHEYRL 86 689**********************************98..789*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.626	1	112	IPR003441	NAC domain
SuperFamily	SSF101941	2.75E-37	7	112	IPR003441	NAC domain
Pfam	PF02365	2.4E-15	17	86	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MIFIREISDL ALYGEKEWYF FTPRDRKYPN GSRPNRAAGS GYWKATGADK PIGQPKPVGI 60 KKALVFYAGK APKGEKTNWI MHEYRLADVD RSARKKNSLR LDDWVLCRIY NKKGSIEKQQ 120 QVTNRRPNFT ETETETEEKK PVVMPSGMDT STSGGALLPN PASTVTGTGT VNDYMYFDTS 180 DSVPKLNTDS SCSEHVVSPE FTCEVQSEPK MQPWENTLGF PYNYLDSAMD ISFNSQLQGN 240 NQLSPLQDMF MYFTKPF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-49	11	118	66	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-49	11	118	66	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-49	11	118	66	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-49	11	118	66	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-49	11	118	69	174	NAC domain-containing protein 19
3swm_B	1e-49	11	118	69	174	NAC domain-containing protein 19
3swm_C	1e-49	11	118	69	174	NAC domain-containing protein 19
3swm_D	1e-49	11	118	69	174	NAC domain-containing protein 19
3swp_A	1e-49	11	118	69	174	NAC domain-containing protein 19
3swp_B	1e-49	11	118	69	174	NAC domain-containing protein 19
3swp_C	1e-49	11	118	69	174	NAC domain-containing protein 19
3swp_D	1e-49	11	118	69	174	NAC domain-containing protein 19
4dul_A	1e-49	11	118	66	171	NAC domain-containing protein 19
4dul_B	1e-49	11	118	66	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.5153	1e-154	callus\| fruit\| leaf\| root\| seed\| vegetative meristem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006434240.1	1e-175	NAC domain-containing protein 2
Swissprot	Q39013	1e-103	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	A0A067GZ03	0.0	A0A067GZ03_CITSI; Uncharacterized protein
STRING	XP_006434240.1	1e-175	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-104	NAC family protein

Link Out ? help Back to Top
Phytozome	orange1.1g025156m

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]