PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g025091m | ||||||||
Common Name | CISIN_1g023047mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Dof | ||||||||
Protein Properties | Length: 259aa MW: 28165.3 Da PI: 7.3233 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 45.9 | 1.2e-14 | 46 | 74 | 36 | 63 |
zf-Dof 36 C.rryWtkGGalrnvPvGggrrknkksss 63 C rryWt+GG+lrn+PvGgg+rknk+sss orange1.1g025091m 46 CpRRYWTEGGSLRNIPVGGGSRKNKRSSS 74 549**********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-8 | 26 | 65 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.1E-9 | 46 | 71 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDTAQWPQEI VVKPIEEIVT NTCPKPASAA ALERKARPQK EQALNCPRRY WTEGGSLRNI 60 PVGGGSRKNK RSSSSSKKLP DPATPPSHHP HQNPKIHDHG EDLNLSFPAA TTQGYRSFSE 120 LVQLPNIDNK SQIPISSSTT TTTTTTSSQQ LSALELLTGI SSRGLNSFMP MPVPDPNAIY 180 APGFPMQDFK PTLNFSLDGL GSGYGSLHHQ SVQENNGRLL FPFEDLKQVS STSDHMEQNR 240 EHGDSSGYWT GMLGGGSW* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269|PubMed:20563990}. | |||||
Uniprot | TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269|PubMed:20563990}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006476325.1 | 0.0 | dof zinc finger protein DOF4.6 isoform X3 | ||||
Swissprot | Q8LAP8 | 2e-42 | DOF46_ARATH; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | A0A067GMN1 | 0.0 | A0A067GMN1_CITSI; Uncharacterized protein | ||||
STRING | XP_006439269.1 | 1e-165 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 5e-35 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g025091m |
Publications ? help Back to Top | |||
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