PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g025053m | ||||||||
Common Name | CISIN_1g021635mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 259aa MW: 29146.3 Da PI: 10.0524 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.1 | 5.2e-34 | 20 | 160 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 lp+G++F+Ptd+el+ e+L++kv+++ ++ e +++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ orange1.1g025053m 20 LPAGVKFDPTDQELL-EHLEAKVRADArklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVHtde 107 799************.99*****999956643322..22222333336**********.555555677******************744456 PP NAM 80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v+ +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l orange1.1g025053m 108 qggETRWHKTGKTRPVFI-GGKVKGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 160 555778************.9*************6658999************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-38 | 14 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.694 | 20 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-16 | 21 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MVIMIRWPFF KARIHDLPGL PAGVKFDPTD QELLEHLEAK VRADARKLHP LIDEFIPTLE 60 GENGICYTHP EKLPGVSKDG LIRHFFHRPS KAYTTGTRKR RKVHTDEQGG ETRWHKTGKT 120 RPVFIGGKVK GYKKILVLYT NYGKQKKPEK TNWVMHQYHL GGNEEEKDGE LVVSKVFYQT 180 QPRQCGNSVI KDSSSLPPKF NINKGQSGLD GLKNNPGVVD YYNPPFIAFD QGGGQNRASP 240 PQALIPPHFA AHDTSFIP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-12 | 20 | 160 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00459 | DAP | Transfer from AT4G28500 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006469079.1 | 0.0 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-113 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A067E6S0 | 0.0 | A0A067E6S0_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PT91 | 0.0 | A0A2H5PT91_CITUN; Uncharacterized protein | ||||
STRING | XP_006469079.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-115 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g025053m |
Publications ? help Back to Top | |||
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