PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g024930m
Common NameCISIN_1g024930mg, LOC102624006
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 261aa    MW: 28922.2 Da    PI: 7.5729
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g024930mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.5e-1457104254
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +++h+e+ErrRR+riNs +++Lr+llP+       K +Ka+ L ++v+++k+L
  orange1.1g024930m  57 CKSHKEAERRRRQRINSHLSTLRTLLPNT-----IKTDKASLLAEVVHHVKEL 104
                        789*************************8.....69***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.02E-1254107No hitNo description
PROSITE profilePS5088815.7255104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-1157104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1358107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-1358110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-1261110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2605.9E-6158227No hitNo description
CDDcd048730.00204163230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MFPFQSHHGS YQNYWSHQNG FVQEPNWPGT LINGEGSIMS STSSASKVEK KSTSDACKSH  60
KEAERRRRQR INSHLSTLRT LLPNTIKTDK ASLLAEVVHH VKELRSQATD VAERDWNSCW  120
SSSSGSEEES WPFPGETDEL TLTPYSDNGI EERRQEQQLL KATLCCEDRP GLNRELTRAI  180
SLVRARAVRA EMTTVGGRTK TVVVIEWVGG GGGNEEMAVL QRALKDIVEN RASGYGLGRI  240
GSGIKRARVG GLVDECDHRD *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006472481.10.0putative transcription factor bHLH107
TrEMBLA0A067GNE50.0A0A067GNE5_CITSI; Uncharacterized protein
STRINGXP_006472481.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1885867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-24bHLH family protein