PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g024930m | ||||||||
Common Name | CISIN_1g024930mg, LOC102624006 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 28922.2 Da PI: 7.5729 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.2 | 3.5e-14 | 57 | 104 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++h+e+ErrRR+riNs +++Lr+llP+ K +Ka+ L ++v+++k+L orange1.1g024930m 57 CKSHKEAERRRRQRINSHLSTLRTLLPNT-----IKTDKASLLAEVVHHVKEL 104 789*************************8.....69***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.02E-12 | 54 | 107 | No hit | No description |
PROSITE profile | PS50888 | 15.72 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-11 | 57 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-13 | 58 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-13 | 58 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-12 | 61 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 5.9E-6 | 158 | 227 | No hit | No description |
CDD | cd04873 | 0.00204 | 163 | 230 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MFPFQSHHGS YQNYWSHQNG FVQEPNWPGT LINGEGSIMS STSSASKVEK KSTSDACKSH 60 KEAERRRRQR INSHLSTLRT LLPNTIKTDK ASLLAEVVHH VKELRSQATD VAERDWNSCW 120 SSSSGSEEES WPFPGETDEL TLTPYSDNGI EERRQEQQLL KATLCCEDRP GLNRELTRAI 180 SLVRARAVRA EMTTVGGRTK TVVVIEWVGG GGGNEEMAVL QRALKDIVEN RASGYGLGRI 240 GSGIKRARVG GLVDECDHRD * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006472481.1 | 0.0 | putative transcription factor bHLH107 | ||||
TrEMBL | A0A067GNE5 | 0.0 | A0A067GNE5_CITSI; Uncharacterized protein | ||||
STRING | XP_006472481.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18858 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 6e-24 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g024930m |
Entrez Gene | 102624006 |