PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g024884m | ||||||||
Common Name | CISIN_1g024884mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 262aa MW: 29056.1 Da PI: 9.3349 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54 | 2.1e-17 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i+ + r tf kR+n +lKKA+E +LCd+ev++ii+++ orange1.1g024884m 10 PIKHEKARLATFKKRKNSLLKKAYEFATLCDVEVCIIIYGP 50 6889999********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.755 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.9E-10 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-16 | 6 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.65E-16 | 6 | 53 | No hit | No description |
Pfam | PF00319 | 3.7E-18 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.5E-8 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MACEALKLEP IKHEKARLAT FKKRKNSLLK KAYEFATLCD VEVCIIIYGP GVKGQSLKPE 60 IWTLKEGQLT SIIRKYKKKI SAVDHGQQRT LSLAKFDESK TRQVDDAATM ARKKICVGDF 120 TTWDQGMDSF SEDQLKMILS TMDDKLKAAD RKLNMIKGDQ NLKNKAASRK LDHDHSNDAK 180 SLVNSQPGYE VSQKLPSDSS FMEIQCGGES GGTIPFTPLQ RQINWNSSLT MSPASSGVYD 240 GNAAQAKKSN DILKDQSSQE E* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.1646 | 0.0 | fruit| seed |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006430718.1 | 0.0 | agamous-like MADS-box protein AGL82 | ||||
Refseq | XP_024037550.1 | 0.0 | agamous-like MADS-box protein AGL82 | ||||
TrEMBL | A0A067FIF5 | 0.0 | A0A067FIF5_CITSI; Uncharacterized protein | ||||
STRING | XP_006430718.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21055 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 6e-23 | AGAMOUS-like 82 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g024884m |