PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g024859m | ||||||||
Common Name | CISIN_1g016887mg, LOC102622694 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HB-other | ||||||||
Protein Properties | Length: 262aa MW: 29167 Da PI: 7.5057 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.4 | 2e-07 | 13 | 74 | 6 | 55 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 +f++ +++e+e ++ n ps+e LA+k ++ +qV +WFqNrR+ orange1.1g024859m 13 RFNPAEVTEMEGILQEhhNAMPSREILVALAEKFsesperkgkiMVQMKQVWNWFQNRRYAI 74 588889999999999766889*********************999**************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.45E-11 | 4 | 75 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.3E-4 | 7 | 81 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-9 | 13 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.9E-5 | 13 | 74 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.26E-6 | 13 | 75 | No hit | No description |
PROSITE profile | PS50071 | 9.685 | 13 | 77 | IPR001356 | Homeobox domain |
Pfam | PF16719 | 1.0E-38 | 143 | 258 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MGRPPSNGGP AFRFNPAEVT EMEGILQEHH NAMPSREILV ALAEKFSESP ERKGKIMVQM 60 KQVWNWFQNR RYAIRAKSIK SPGKLNVTPL ARDDSTPGRN VPQPVAAPIP IPMSASVPPT 120 MPASANVPSV STAGRAASES TFMEFEAKSA RDGAWYDVSA FLAQRNFDTA DPEVQVRFAG 180 FGAEEDEWVN IKRHVRQRSL PCEASECVAV LPGDLILCFQ EGKDQALYFD AHVLDAQRRR 240 HDVRGCRCRF LVRYDHDQSE V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 5e-42 | 143 | 260 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 5e-42 | 143 | 260 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 5e-42 | 143 | 260 | 4 | 121 | SHH1 SAWADEE |
4iur_B | 5e-42 | 143 | 260 | 4 | 121 | SHH1 SAWADEE |
4iut_A | 5e-42 | 143 | 260 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 5e-42 | 143 | 260 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 5e-42 | 143 | 260 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 5e-42 | 143 | 260 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 5e-42 | 143 | 260 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 5e-42 | 143 | 260 | 4 | 121 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.8318 | 1e-131 | callus| flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006451761.1 | 0.0 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
Refseq | XP_006464825.1 | 0.0 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1 | ||||
Swissprot | Q8RWJ7 | 1e-133 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A067F5M3 | 0.0 | A0A067F5M3_CITSI; Uncharacterized protein | ||||
TrEMBL | V4UR89 | 0.0 | V4UR89_9ROSI; Uncharacterized protein | ||||
STRING | XP_006464825.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006451761.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.3 | 1e-120 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g024859m |
Entrez Gene | 102622694 |