PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g024832m
Common NameCISIN_1g022924mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 263aa    MW: 28237.9 Da    PI: 4.8967
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g024832mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.51.4e-16173208134
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                        C++Cg ++  Tp++Rrgp+g+++LCnaCGl+++ kg
  orange1.1g024832m 173 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANKG 208
                        *****99999***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132010.5265100IPR010399Tify domain
PfamPF062001.0E-86890IPR010399Tify domain
PfamPF062033.7E-16104146IPR010402CCT domain
PROSITE profilePS5101712.531104146IPR010402CCT domain
SMARTSM004012.7E-15167220IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.882167226IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-11169215No hitNo description
Gene3DG3DSA:3.30.50.101.1E-15171213IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.75E-15172220No hitNo description
PROSITE patternPS003440173200IPR000679Zinc finger, GATA-type
PfamPF003202.2E-14173208IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MYGQSQSMNI SSQMSGGGAA ADEDDVSVAA DDHHLSYDPH SALENGIVVV EDVAHDSGYA  60
TGGNELSNSS QLTLSFRGQV YVFDSVTPDK GIADYPAKCT QPQRAASLDR FRQKRKERCF  120
DKKVRYSVRQ EVALRMQRNK GQFTSAKKCE GGALGWSNAQ DPGQDDSPSE TSCTHCGISS  180
KSTPMMRRGP SGPRSLCNAC GLFWANKGAL RDLGKKMEDQ PLTPAEQGEG EVNDSDCGTA  240
AHTDNELVSF SNDDDSALIS EH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.14181e-121flower| fruit| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024040655.10.0GATA transcription factor 25 isoform X3
SwissprotQ9LRH69e-75GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A067H1070.0A0A067H107_CITSI; Uncharacterized protein
STRINGXP_006472435.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.27e-72GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]