PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g024771m | ||||||||
Common Name | CISIN_1g024771mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GATA | ||||||||
Protein Properties | Length: 263aa MW: 29001.8 Da PI: 8.1615 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.2 | 2.7e-19 | 179 | 213 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ kTp+WR gp g+ktLCnaCG+++++ +l orange1.1g024771m 179 CQHCGAEKTPQWRAGPMGPKTLCNACGVRFKSGRL 213 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 8.5E-17 | 173 | 223 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.14E-14 | 176 | 236 | No hit | No description |
PROSITE profile | PS50114 | 11.78 | 176 | 209 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 6.0E-15 | 177 | 211 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.50E-13 | 178 | 226 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 179 | 204 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 7.4E-17 | 179 | 213 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MESLDLQVCC IDDLLDFNIN DDECGKPTKR PRNALSSVNR NGCDFDVFEA GDDTDRLFPE 60 CAEEELEWLS NFPTVETFVD ISSNPNILKQ QSPNSVLENS NSSSSTSTNG STITNGNNNS 120 NSIIMNCCGN LRVPVRARSK LRTRCRRELL NQEAWWGSVH GSVKAAKPVV SKVIIGRKCQ 180 HCGAEKTPQW RAGPMGPKTL CNACGVRFKS GRLVPEYRPA NSPTFSSELH SNSHRKVVEM 240 RRQKQMMGIE LGVLGVKPVD KG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.2473 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269|PubMed:12139008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006420528.1 | 0.0 | GATA transcription factor 1 isoform X1 | ||||
Swissprot | Q8LAU9 | 9e-54 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | A0A067E4Y6 | 0.0 | A0A067E4Y6_CITSI; Uncharacterized protein | ||||
STRING | XP_006420528.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12987 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 2e-49 | GATA transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g024771m |