PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g024757m

Common Name

CISIN_1g024757mg, LOC102630201

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GATA

Protein Properties

Length: 264aa MW: 29380.1 Da PI: 6.3924

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g024757m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56.1	4.9e-18	167	201	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG++y++ +l orange1.1g024757m 167 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 201 *******************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	5.3E-84	1	256	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	2.6E-16	161	211	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.24E-14	165	225	No hit	No description
PROSITE profile	PS50114	11.385	165	197	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	9.6E-14	165	199	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	3.22E-13	166	213	No hit	No description
PROSITE pattern	PS00344	0	167	192	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	7.0E-16	167	201	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009416	Biological Process	response to light stimulus
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MDIYGLPSNN TTTQDLFRID DLLDFSNDEL FTSSSSAATA NTTAIASDTD HLPQAQHQSF 60 DSFNPSSDFT GDLCVPSDDV AELEWLSQFV DDSCMDFPAN SLAGTIVRSD TSLSGRGRSK 120 RSKATNSAAN TTTWNWTSSE SESGNSKQKR ENHRQSSPIP EGGVRRCTHC ASEKTPQWRT 180 GPLGPKTLCN ACGVRYKSGR LVPEYRPASS PTFVLTQHSN SHRKVLELRR QKELLRQQQL 240 QQQQQQEEGQ GQIYRHQRDF EVC*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in flowers and leaves, and to a lower extent in stems. {ECO:0000269\|PubMed:12139008}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269\|PubMed:12139008}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006445338.1	0.0	GATA transcription factor 4
Refseq	XP_006490843.1	0.0	GATA transcription factor 4
Swissprot	O49741	7e-78	GATA2_ARATH; GATA transcription factor 2
TrEMBL	A0A067HCR1	0.0	A0A067HCR1_CITSI; GATA transcription factor
TrEMBL	V4TE11	0.0	V4TE11_9ROSI; GATA transcription factor
STRING	XP_006490843.1	0.0	(Citrus sinensis)
STRING	XP_006445338.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3203	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60530.1	1e-59	GATA transcription factor 4

Link Out ? help Back to Top
Phytozome	orange1.1g024757m
Entrez Gene	102630201

Publications ? help Back to Top
Jiang K,Yung V,Chiba T,Feldman LJ Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain. Planta, 2018. 247(4): p. 831-843 [PMID:29249045]