PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g024675m
Common NameCISIN_1g024675mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 265aa    MW: 30322.8 Da    PI: 5.0083
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g024675mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.3e-1857110356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k++++t +q+++Le+ Fe ++++  +++ +LA++lgL+ rq+ vWFqNrRa+ k
  orange1.1g024675m  57 KKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLK 110
                        56689***********************************************98 PP

2HD-ZIP_I/II124.45.4e-4056148193
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekkrrl+ +qvk+LE++Fe ++kLep+rKv+la+eLglqprq+avWFqnrRAR k+k+lE+dy  Lk++ydal+ + ++L++e+e+L++el+
  orange1.1g024675m  56 EKKRRLTVDQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELR 147
                        69***************************************************************************************998 PP

        HD-ZIP_I/II  93 e 93 
                        e
  orange1.1g024675m 148 E 148
                        6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-1848113IPR009057Homeodomain-like
PROSITE profilePS5007117.62152112IPR001356Homeobox domain
SMARTSM003898.6E-1855116IPR001356Homeobox domain
CDDcd000862.46E-1557113No hitNo description
PfamPF000462.3E-1557110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-1959118IPR009057Homeodomain-like
PRINTSPR000319.9E-68392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000319.9E-692108IPR000047Helix-turn-helix motif
PfamPF021836.6E-15112153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MKRFSSSDSF DALITVYKSA DKTSTKRKQI YGREFQAMMD CLEEEDCREE ASQATEKKRR  60
LTVDQVKALE KNFEVDNKLE PDRKVKLAEE LGLQPRQIAV WFQNRRARLK SKELERDYGL  120
LKANYDALRL DYNNLQQENE ALTAELRELK AKLCQENEET SHAVEAEAPV SEQSKNHVSS  180
ENANAQLLTS PPSFSPLFTG SSSSSHPSMN WVQFSDSRTI LSNVYQQPQL VKVEEQSLLF  240
NPEDPCNIFS VDQAPTLQWY FTGH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.117870.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006472553.10.0homeobox-leucine zipper protein ATHB-6-like isoform X1
TrEMBLA0A067GZZ60.0A0A067GZZ6_CITSI; Uncharacterized protein
STRINGXP_006472553.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.12e-52homeobox protein 6