PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g024670m
Common NameCISIN_1g024670mg, LOC102615360
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 265aa    MW: 28804.7 Da    PI: 8.0321
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g024670mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.5e-1275121354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h+e+ErrRR+riN  +++Lr l+P++     +K++Ka+ L ++++ +k+L
  orange1.1g024670m  75 KNHSEAERRRRERINAHLDTLRGLVPPN-----GKMDKATLLAEVIRQVKEL 121
                        58************************99.....9************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.71372121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-1075121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-1376123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1276123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-1178127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.83E-4161229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAAYSFDQNS PLGQGFGGFS KLYDPFLGGF NGANLRGGSI PQSLVLDSVR GELVKAPAKV  60
GKKEVSEAKA MVALKNHSEA ERRRRERINA HLDTLRGLVP PNGKMDKATL LAEVIRQVKE  120
LKTNAIEASK GFLIPTDADE VKVEPYNDEE AGDADFLYKA SICCEYRPEL MSDLRQALDA  180
LPLKMLKAEI STLGGRLKNV IVFTSCKEGN AEASQTLAND VQQALNSVLE KASPSPEYSP  240
RTTLPNKRQR ISFLDSSSSS SREL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449491.10.0transcription factor bHLH30
RefseqXP_006467661.10.0transcription factor bHLH30
TrEMBLA0A067GQY40.0A0A067GQY4_CITSI; Uncharacterized protein
TrEMBLA0A2H5N3B20.0A0A2H5N3B2_CITUN; Uncharacterized protein
TrEMBLV4UKA30.0V4UKA3_9ROSI; Uncharacterized protein
STRINGXP_006467661.10.0(Citrus sinensis)
STRINGXP_006449491.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM155811017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-42bHLH family protein