PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g024653m

Common Name

CISIN_1g024653mg, LOC102630474

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 265aa MW: 30100.9 Da PI: 7.3423

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g024653m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.5	5e-08	153	200	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + + k + ++L + ++Y++sLq orange1.1g024653m 153 SHSLAERVRRGKINERLRCLQDIVPGC---Y-KTMGMTMMLDEIINYVQSLQ 200 8***********************9...3.447778999***999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.28E-15	147	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.08E-9	147	204	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.2E-15	149	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.5	149	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-5	153	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.0E-7	155	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MADFAQDLQY FRASSSFPFL DIDPNIEQIN NNLSVLDNTS LLNYQSFMPF SNPDNFFEFP 60 GNLAENFPGN FIQNNMLPVC HTVTSTKCES KNRKAVEISE SSNEDSSPVS EIETNKRKKN 120 SGRRKRVKGN EKEEEKSKEV VHVRARRGQA TDSHSLAERV RRGKINERLR CLQDIVPGCY 180 KTMGMTMMLD EIINYVQSLQ NQVEFLSMKL TAASTFYDFN SESDAVETMQ KAKAYKAKEM 240 ERLMKEGNFA CSSSSSFLTI TRPL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in stems. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006485801.1	0.0	transcription factor BEE 3
Swissprot	Q8GWK7	2e-67	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A067EQR4	0.0	A0A067EQR4_CITSI; Uncharacterized protein
STRING	XP_006485801.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2997	27	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73830.1	1e-60	BR enhanced expression 3

Link Out ? help Back to Top
Phytozome	orange1.1g024653m
Entrez Gene	102630474

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]