PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g024602m

Common Name

CISIN_1g024602mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 266aa MW: 29557.4 Da PI: 7.562

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g024602m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00058	143	165	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H orange1.1g024602m 143 YECKTCNRTFPSFQALGGHRASH 165 99**********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.68E-5	142	170	No hit	No description
Pfam	PF13912	2.3E-13	142	167	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.637	143	170	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	145	165	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MINSNNNNNN KDQQSHNNNI VKGKRTKRQR PQSPVPFVVN GTIHDNTNLS SSPAVSSAEE 60 FFDSTEEDED MANCLILLAQ CKSTRESPPK PKPAHYDIHE QEEIAQLQIN NNVNNSGMKF 120 NSRRFLEAPV TGTGTGKGGC YVYECKTCNR TFPSFQALGG HRASHKKPKA MLMNDDRLSL 180 KSQHQQQQQQ QFLVSKSDDE EEDGNFRNIS SLSLQLSNNN RSNNNNNNNG SFYSGNINNG 240 VVKGNSSKVH DATINCGFQD HLILD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006436528.1	1e-144	zinc finger protein ZAT5
Refseq	XP_006485347.1	1e-144	zinc finger protein ZAT5-like
TrEMBL	A0A067D8F5	0.0	A0A067D8F5_CITSI; Uncharacterized protein
STRING	XP_006485347.1	1e-143	(Citrus sinensis)
STRING	XP_006436528.1	1e-143	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2231	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	2e-30	C2H2 family protein

Link Out ? help Back to Top
Phytozome	orange1.1g024602m