PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g024492m
Common NameCISIN_1g024492mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 268aa    MW: 30048.5 Da    PI: 5.6436
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g024492mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.6e-191461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++l+++vk++G g+W++ ++  g+ R++k+c++rw +yl
  orange1.1g024492m 14 KGPWTPEEDQILINYVKLYGHGNWRALPKQAGLLRCGKSCRLRWINYL 61
                       79******************************99************97 PP
2Myb_DNA-binding51.81.8e-1667112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++T eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  orange1.1g024492m  67 RGNFTREEEDTIINLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-27564IPR009057Homeodomain-like
PROSITE profilePS5129425.662965IPR017930Myb domain
SuperFamilySSF466896.7E-3210108IPR009057Homeodomain-like
SMARTSM007171.1E-151363IPR001005SANT/Myb domain
PfamPF002492.1E-171461IPR001005SANT/Myb domain
CDDcd001671.12E-121661No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2665117IPR009057Homeodomain-like
SMARTSM007171.6E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129420.42466116IPR017930Myb domain
PfamPF002492.3E-1567112IPR001005SANT/Myb domain
CDDcd001674.05E-1069111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MVRAPCCEKM GLKKGPWTPE EDQILINYVK LYGHGNWRAL PKQAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TREEEDTIIN LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLKQKQ  120
QQEPVINNHS NANHVTARSE ICSGASTPDR QDSTTTSSDM SSVTSSAANN ACVKTEPSSS  180
ENNHDSLVEI DENFWTEVLS AENSGISIED SNDRFSAVGS ADPLSIVEFQ SSLDDFRPGS  240
TLCDNTDFWF NLFTKAGDFS EMLPEIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKRLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.170890.0callus| flower| fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443843.10.0transcription factor MYB13
RefseqXP_006479545.10.0transcription factor MYB13
SwissprotQ7XBH45e-82MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A067F2Z60.0A0A067F2Z6_CITSI; Uncharacterized protein
STRINGXP_006479545.10.0(Citrus sinensis)
STRINGXP_006443843.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.18e-76myb domain protein 14
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]