PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g024428m
Common NameCISIN_1g024428mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 269aa    MW: 30274.3 Da    PI: 6.3645
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g024428mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.5e-071932282155
                        HSSS--HH.HHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  21 knrypsae.ereeLAkklgLterqVkvWFqNrRake 55 
                        k +yps+e ++  LA+++gL+ +q+ +WF N+R ++
  orange1.1g024428m 193 KWPYPSQEsQKLALAESTGLDSKQINNWFINQRKRH 228
                        5689987626779********************885 PP
2ELK383.5e-13147168122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK qLlr Ysg+L+sLkqEF+
  orange1.1g024428m 147 ELKGQLLRRYSGCLSSLKQEFM 168
                        9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.8E-191155IPR005540KNOX1
PfamPF037902.6E-211351IPR005540KNOX1
SMARTSM012568.5E-2760111IPR005541KNOX2
PfamPF037917.7E-2363109IPR005541KNOX2
PfamPF037891.3E-10147168IPR005539ELK domain
PROSITE profilePS5121310.423147167IPR005539ELK domain
SMARTSM011888.6E-8147168IPR005539ELK domain
PROSITE profilePS5007110.349167231IPR001356Homeobox domain
SMARTSM003892.8E-8169235IPR001356Homeobox domain
SuperFamilySSF466899.41E-17169242IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-26172234IPR009057Homeodomain-like
CDDcd000863.66E-10179232No hitNo description
PfamPF059205.3E-15187227IPR008422Homeobox KN domain
PROSITE patternPS000270206229IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
METNYGSGAS SSVKAKIMAH PHYHRLLAAY ANCQKVGAPP EVVARLEEVC ASAASMGSGG  60
SSCIGQDPAL DQFMEAYCEM LTKYEQELSK PFKEAMSFLQ KIESQFKSLS ISSPNSASSE  120
AIDRNGSSEE DFDVNIDFID PQAEDQELKG QLLRRYSGCL SSLKQEFMKK RKKGKLPKEA  180
RQQLLDWWSK HYKWPYPSQE SQKLALAEST GLDSKQINNW FINQRKRHWK PSEDMQFMVM  240
DATQPQYYID STVMGNPFPM DLSPAPLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162171LKQEFMKKRK
2168172KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter.
UniprotTISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024950437.10.0homeobox protein SHOOT MERISTEMLESS isoform X1
SwissprotP466081e-141HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A067GI800.0A0A067GI80_CITSI; Uncharacterized protein
TrEMBLV4W9S00.0V4W9S0_9ROSI; Uncharacterized protein
STRINGXP_006449809.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64732644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-126KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]