PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g024326m
Common NameCISIN_1g024326mg, LOC102610740
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 270aa    MW: 30016.1 Da    PI: 6.063
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g024326mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-1276122354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h e+Er+RR+riN  +++Lr+l+P a     +K++Ka+ L++++  +k+L
  orange1.1g024326m  76 KNHIEAERNRRKRINGHLDTLRSLIPGA-----TKMDKATLLTEVISQLKEL 122
                        589************************9.....9***********9988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-1368124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.72673122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-1076122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-1176122No hitNo description
Gene3DG3DSA:4.10.280.106.9E-1277147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-1179128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2602.3E-6161205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MLAMDPYFWS SCRNDNGVEI LTDEFVVNNG FQGKSRNGSS SHSSLVLDSE RGELVEANVK  60
LQRKGVSEDR SVAALKNHIE AERNRRKRIN GHLDTLRSLI PGATKMDKAT LLTEVISQLK  120
ELDKNAMEAT EGFLIPTDID EVKVEQQEDG LDGAPYSIKA SLCCNYKPGL LSDLRRVLEA  180
LHLSIVKAEI ATLEGRMKNI FVMASCKELN FENTEVCQSL VSSVHQAIRS VLDKFSATEE  240
FLLGARLSNK RRRVSLFDSS LSSSSDYLW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249253KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006469029.10.0putative transcription factor bHLH107 isoform X1
TrEMBLA0A067FIQ80.0A0A067FIQ8_CITSI; Uncharacterized protein
STRINGXP_006469029.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1859456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.17e-32bHLH family protein