PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g024139m
Common NameCISIN_1g024139mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 273aa    MW: 29901.7 Da    PI: 9.2633
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g024139mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08180220954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  orange1.1g024139m 180 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 220
                        699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-13172230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-14175230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-6181220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-6194225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEFDRLKSAA TEDQMEMMVM MMQMDKFPEF YGACTNNDVA ELLPADHTSA TITTNSNIAS  60
STPHFVDNNS PHIVSSPSFS NMLSNSNTSL NGTSITAAQG TSIPTYFSYS PNERYWRGGA  120
GDSNSSTGVP LSQKQNSMAA MRETIFRVAA MQPIHIDPDS VKPPKRRNVK ISKDPQSVAA  180
RHRRERISER IRILQRLVPG GTKMDTASML DEAIHYVKFL KTQVQSLERA AANRPAGIGF  240
PATLTTGNYP PIIGKEYQQP AVRNGALHYG DA*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the developing septum, transmitting tract and stigma. {ECO:0000269|PubMed:17855426}.
UniprotTISSUE SPECIFICITY: Gynoecium. {ECO:0000269|PubMed:17855426}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434747.10.0transcription factor HEC2
SwissprotQ9SND42e-45HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A067H8T10.0A0A067H8T1_CITSI; Uncharacterized protein
TrEMBLV4T4700.0V4T470_9ROSI; Uncharacterized protein
STRINGXP_006434747.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15592791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.17e-41bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]