PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g024111m
Common NameCISIN_1g017964mg, LOC102610603
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 273aa    MW: 30898.6 Da    PI: 7.2208
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g024111mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.3e-09165212455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+++Er RR++iN+++  L++l+P +    +k +  a +Le+ ++Y++sLq
  orange1.1g024111m 165 SHSIAERVRREKINKKMRCLQDLVPGC----HKDMGMAGMLEEIINYVHSLQ 212
                        8*************************9....777****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-16159223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.07E-9159216No hitNo description
Gene3DG3DSA:4.10.280.109.6E-17161223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.932161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6165212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-8167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MADFRENTQS LRASQAFTEL GVNMEMVKHF AELKPSMLEY FNTPNFSLAT PLAHQQPEFL  60
AGCSYNNSFS NFQTDSRIVV PRVRTVRGNE DVLYESSRRE VTEQSTSISK TMCSSASTSE  120
TQGDTYKNKK IRSRRGKKVS SNEKEEGNPE RIIHVRAKRG QATDSHSIAE RVRREKINKK  180
MRCLQDLVPG CHKDMGMAGM LEEIINYVHS LQNQVEFLSM ELAAACSSND LNIETESSRK  240
TQGTNSHEAL EMEIWAKEAY GEYTSFHSTW SL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482245.10.0transcription factor bHLH75
TrEMBLA0A067EV900.0A0A067EV90_CITSI; Uncharacterized protein
STRINGXP_006482245.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.11e-48BR enhanced expression 3