PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g024081m | ||||||||
Common Name | CISIN_1g024128mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 273aa MW: 29731.6 Da PI: 9.1031 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.1 | 1.8e-12 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+e l +v+++G+g Wk I r R+ ++k++w++ orange1.1g024081m 5 KQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEfnpflFSRSNIDLKDKWRN 55 79*****************************9*9**989**********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.355 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.44E-16 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-9 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-9 | 5 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-14 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 3.65E-21 | 6 | 56 | No hit | No description |
Gene3D | G3DSA:1.10.10.10 | 5.9E-16 | 107 | 182 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 2.0E-21 | 108 | 173 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 5.28E-17 | 109 | 190 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 25.737 | 110 | 178 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 4.3E-11 | 112 | 171 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 273 aa Download sequence Send to blast |
MGNPKQKWTA EEEEALRAGV AKHGTGKWKN IQRDPEFNPF LFSRSNIDLK DKWRNMSVSA 60 PREKSRTLKP KAGSDAPAVP LSTPQTSALP AAVPIDASAD PITDESARSS APKYNALIFE 120 AISALKEPNG SDVSAILSYI EQRLEVPPNF RRLLSSRLRR LVAQEKLEKV QNCFKVKEDA 180 SLGTKTPNPK QKDTRPKLLH STNDVSPADT VQEAAAAAAG QVADAENKSF VAAEAVKEAE 240 RVSRMAEDTD SLLQLAKEIF ERCSRGEIVV VA* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006451517.1 | 0.0 | single myb histone 4 | ||||
Refseq | XP_006475491.1 | 0.0 | single myb histone 4-like | ||||
Swissprot | F4IEY4 | 4e-74 | TRB5_ARATH; Telomere repeat-binding factor 5 | ||||
TrEMBL | A0A067EH62 | 0.0 | A0A067EH62_CITSI; Uncharacterized protein | ||||
STRING | XP_006475491.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006451517.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2321 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72740.2 | 5e-57 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g024081m |
Publications ? help Back to Top | |||
---|---|---|---|
|