PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g023942m | ||||||||
Common Name | CISIN_1g022924mg, LOC102612850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GATA | ||||||||
Protein Properties | Length: 276aa MW: 29957.5 Da PI: 8.2167 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.4 | 1.5e-16 | 201 | 236 | 1 | 34 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg ++ Tp++Rrgp+g+++LCnaCGl+++ kg orange1.1g023942m 201 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANKG 236 *****99999***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 15.04 | 65 | 100 | IPR010399 | Tify domain |
SMART | SM00979 | 8.2E-12 | 65 | 100 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.6E-13 | 68 | 99 | IPR010399 | Tify domain |
Pfam | PF06203 | 4.0E-16 | 132 | 174 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.531 | 132 | 174 | IPR010402 | CCT domain |
SMART | SM00401 | 2.7E-15 | 195 | 248 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.304 | 195 | 256 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.33E-11 | 197 | 244 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-15 | 199 | 241 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.19E-14 | 200 | 248 | No hit | No description |
Pfam | PF00320 | 2.4E-14 | 201 | 236 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 201 | 228 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MYGQSQSMNI SSQMSGGGAA ADEDDVSVAA DDHHLSYDPH SALENGIVVV EDVAHDSGYA 60 TGGNELSNSS QLTLSFRGQV YVFDSVTPDK VQAVLLLLGG CELSSSPQGM EVIPHSQRGI 120 ADYPAKCTQP QRAASLDRFR QKRKERCFDK KVRYSVRQEV ALRMQRNKGQ FTSAKKCEGG 180 ALGWSNAQDP GQDDSPSETS CTHCGISSKS TPMMRRGPSG PRSLCNACGL FWANKGALRD 240 LGKKMEDQPL TPAEQRSKHG NLFLWHISSF RVKVK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.1418 | 1e-124 | flower| fruit| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:10945256, ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00451 | DAP | Transfer from AT4G24470 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006472436.1 | 0.0 | GATA transcription factor 25 isoform X2 | ||||
Refseq | XP_015384209.1 | 0.0 | GATA transcription factor 25 isoform X3 | ||||
Swissprot | Q9LRH6 | 6e-83 | GAT25_ARATH; GATA transcription factor 25 | ||||
TrEMBL | A0A067H0L5 | 0.0 | A0A067H0L5_CITSI; Uncharacterized protein | ||||
STRING | XP_006472435.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24470.2 | 1e-73 | GATA-type zinc finger protein with TIFY domain |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g023942m |
Entrez Gene | 102612850 |
Publications ? help Back to Top | |||
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