PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g023821m
Common NameCISIN_1g016791mg, LOC102611907
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 277aa    MW: 30471 Da    PI: 8.6962
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g023821mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.51.7e-1253796128
                NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++++vg+kk Lvfy g+ pkg kt+W+mheyrl
  orange1.1g023821m   5 SNQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 37 
                        5789***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.747171IPR003441NAC domain
SuperFamilySSF1019414.45E-17572IPR003441NAC domain
PfamPF023652.2E-5837IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MSSGSNQKVG VKKALVFYGG KPPKGIKTNW IMHEYRLTDN KVSNKPPGCD LGNKKNSLRL  60
DDWVLCRIYK KNNLHRPLMD HDKDDSMDDM LGVHIPPSLM ISSQQQNTNL KLHMPTRGAN  120
LNSFGALLVN EPNFFEGLTS HDGINNNSSN NNNGSISSHH HHQFAASSSS KLQVQAMDSL  180
KRTLPSSSWT DHEDVPSGGA LVNKRFHGEN NVNDDQSIEG RTDHHGNGSS SIATLLSQLP  240
QTPPPPSIHQ QAILGSLGDG IFRQPYHQLP GMNWYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-18373108167NO APICAL MERISTEM PROTEIN
1ut4_B2e-18373108167NO APICAL MERISTEM PROTEIN
1ut7_A2e-18373108167NO APICAL MERISTEM PROTEIN
1ut7_B2e-18373108167NO APICAL MERISTEM PROTEIN
3swm_A2e-18173109170NAC domain-containing protein 19
3swm_B2e-18173109170NAC domain-containing protein 19
3swm_C2e-18173109170NAC domain-containing protein 19
3swm_D2e-18173109170NAC domain-containing protein 19
3swp_A2e-18173109170NAC domain-containing protein 19
3swp_B2e-18173109170NAC domain-containing protein 19
3swp_C2e-18173109170NAC domain-containing protein 19
3swp_D2e-18173109170NAC domain-containing protein 19
4dul_A2e-18373108167NAC domain-containing protein 19
4dul_B2e-18373108167NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182DSLKRT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.106143e-39fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451941.10.0NAC transcription factor 56
RefseqXP_006464707.10.0NAC transcription factor 56
TrEMBLA0A067G3H70.0A0A067G3H7_CITSI; Uncharacterized protein
TrEMBLA0A067GFE80.0A0A067GFE8_CITSI; Uncharacterized protein
TrEMBLA0A2H5Q3Q90.0A0A2H5Q3Q9_CITUN; Uncharacterized protein
TrEMBLV4URT40.0V4URT4_9ROSI; Uncharacterized protein
STRINGXP_006464707.10.0(Citrus sinensis)
STRINGXP_006451941.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.14e-45NAC domain containing protein 2