PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g023725m
Common NameCISIN_1g019954mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 279aa    MW: 32169.6 Da    PI: 4.4403
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g023725mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-194194356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       k++++t +q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  orange1.1g023725m 41 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 94
                       56689************************************************9 PP
2HD-ZIP_I/II127.94.2e-4140131192
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekkrrl+ +qv++LE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L+++y++lk++ ++L ke+e+L++e+ 
  orange1.1g023725m  40 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVL 131
                        69**************************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-193098IPR009057Homeodomain-like
PROSITE profilePS5007117.3943696IPR001356Homeobox domain
SMARTSM003891.5E-1939100IPR001356Homeobox domain
PfamPF000466.9E-174194IPR001356Homeobox domain
CDDcd000861.54E-174197No hitNo description
Gene3DG3DSA:1.10.10.605.7E-2043104IPR009057Homeodomain-like
PRINTSPR000311.1E-56776IPR000047Helix-turn-helix motif
PROSITE patternPS0002707194IPR017970Homeobox, conserved site
PRINTSPR000311.1E-57692IPR000047Helix-turn-helix motif
PfamPF021831.8E-1696138IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MVSFEDVHLA NGSNNRPFFR PFDRDENGDE DFDEYFHQPE KKRRLTVDQV QFLEKSFEVE  60
NKLEPERKIQ LAKDLGLQPR QVAIWFQNRR ARWKTKQLEK DYDVLQNSYN SLKADYDNLF  120
KEKEKLKAEV LKLTDKLQVK EKESKNTELP VVNKQEPPQI SEPVADSAAS EGKVCKASVV  180
ACKQEDISSA KSDIFDSDSP NYTDGVHSSL LETCDSSYVF EPEQSDLSQD EDDSLSKNVL  240
LPPYVFPKLE ETEYSDPPTN SCNFGFPIED HAFWSWSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18896RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.43130.0callus| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920820.0KR492082.1 UNVERIFIED: Citrus sinensis clone 170-1k mRNA sequence.
GenBankKR4921500.0KR492150.1 UNVERIFIED: Citrus maxima clone 170-1 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476659.10.0homeobox-leucine zipper protein HAT5
TrEMBLA0A067G8Q00.0A0A067G8Q0_CITSI; Uncharacterized protein
TrEMBLA0A067GL370.0A0A067GL37_CITSI; Uncharacterized protein
STRINGXP_006476659.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-44homeobox 1