PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g023629m

Common Name

CISIN_1g023629mg, LOC102623576

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 280aa MW: 30988.1 Da PI: 8.8126

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g023629m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.7	1.2e-14	83	129	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN +++Lr+l+Pk+ +K++Ka+ L A+e++k+L orange1.1g023629m 83 KSHSQAEKRRRDRINAQLATLRKLIPKS-----EKMDKAALLGSAIEHVKDL 129 68***********************8.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.574	80	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-13	82	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-15	83	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-12	83	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.57E-10	83	130	No hit	No description
SMART	SM00353	3.4E-12	86	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	2.67E-4	183	247	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MENFSHQSAT ACPDQMNYWA ANSNFPLTWL QQTPAPHVNS SASTSNSNSN SIDHHFHELP 60 YSWSNINPMT QEVAEDRATA VSKSHSQAEK RRRDRINAQL ATLRKLIPKS EKMDKAALLG 120 SAIEHVKDLK LKAMEVSKTL TIPTEVDEVT VECELFQAAE ARAETEAGSS INKVKGDTLI 180 KASVSCDDQP ELYKEIIRVL KGLGLTTVRA DISSVGGRIK SILVLCNKDA CDHQESVSLS 240 RRLKQALHLA LSRMSSSSSM ASNCRIRSKR QRLFLPYHN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435771.1	0.0	transcription factor bHLH51
Refseq	XP_006486294.1	0.0	transcription factor bHLH51
TrEMBL	A0A067FRW8	0.0	A0A067FRW8_CITSI; Uncharacterized protein
TrEMBL	A0A2H5NJV2	0.0	A0A2H5NJV2_CITUN; Uncharacterized protein
TrEMBL	V4TH02	0.0	V4TH02_9ROSI; Uncharacterized protein
STRING	XP_006486294.1	0.0	(Citrus sinensis)
STRING	XP_006435771.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6806	25	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	4e-45	bHLH family protein

Link Out ? help Back to Top
Phytozome	orange1.1g023629m
Entrez Gene	102623576