PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g023560m | ||||||||
Common Name | CISIN_1g022728mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GATA | ||||||||
Protein Properties | Length: 281aa MW: 30692.9 Da PI: 6.4234 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.2 | 1.7e-16 | 202 | 238 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g++tLCnaCGl+++ kg+ orange1.1g023560m 202 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 238 *****99999************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.633 | 71 | 106 | IPR010399 | Tify domain |
SMART | SM00979 | 6.8E-11 | 71 | 106 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.1E-12 | 77 | 105 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.106 | 126 | 168 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.5E-15 | 126 | 168 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 9.183 | 196 | 253 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.7E-14 | 196 | 249 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.47E-13 | 197 | 259 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.4E-16 | 200 | 243 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.42E-15 | 201 | 244 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 202 | 229 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.8E-14 | 202 | 238 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MDHGSNPQMQ MSDEQHAIHH VNYVPEHELH HISNGDVMDD EHDEGNGVGE SEAMEGDAPS 60 DPGSLSDNRA VSEIGDQLTL SFQGQVYVFD SVSPEKVQAV LLLLGGREVP STTPAIPIAN 120 NQNNRRLASL IRFREKRKER NFEKKIRYTV RKEVALRMQR NKGQFTSAKS NNEDSASAIS 180 SWGSNQSWAG DVNGSQNQDI VCRHCGISEK STPMMRRGPE GPRTLCNACG LMWANKGTLR 240 DLSKAAPQAG QTSSLNKNEE NGTLKAEQVI RAVGNINGST * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.5408 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00198 | DAP | Transfer from AT1G51600 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006465169.1 | 0.0 | GATA transcription factor 28 isoform X2 | ||||
Swissprot | Q8H1G0 | 1e-120 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | A0A067DEX3 | 0.0 | A0A067DEX3_CITSI; Uncharacterized protein | ||||
STRING | XP_006465167.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 1e-108 | ZIM-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g023560m |