PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g023419m | ||||||||
Common Name | CISIN_1g0160951mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 283aa MW: 31547.4 Da PI: 8.0414 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 38.9 | 2.6e-12 | 2 | 38 | 92 | 128 |
NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s++++ +glkktLvfy+g+apkg +t+W+m+eyrl orange1.1g023419m 2 IKSENSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 38 56678999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.947 | 1 | 59 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-14 | 2 | 59 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-4 | 9 | 38 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MIKSENSRSI GLKKTLVFYS GKAPKGIRTS WIMNEYRLPQ HETERYQKAE ISLCRVHKRP 60 GVEDHTSLPR CLPTSKASSS RTGSSRSTTR PDKILYYHHR RHGIERLQGF GGQSSHQQME 120 MVTDEKMSTN TDQTDGSSSS CSDVAAVLGL SKQNVYRPNM ASITTSLLGL PSSIMEEQAA 180 ASTLVPSCTT TTLFPVALSS SSSSSLIYSD AADEFHGLLT YPQASMNHHQ QYYNIDHHLH 240 LQELQPQSLN LLATPLPAAF SDRLWEWNPI LEASREYNDP FK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006431384.1 | 0.0 | NAC domain-containing protein 35 | ||||
TrEMBL | A0A067DMW5 | 0.0 | A0A067DMW5_CITSI; Uncharacterized protein | ||||
TrEMBL | V4SV38 | 0.0 | V4SV38_9ROSI; Uncharacterized protein | ||||
STRING | XP_006431383.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 4e-39 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g023419m |