PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g023389m | ||||||||
Common Name | CISIN_1g023210mg, LOC102608580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | G2-like | ||||||||
Protein Properties | Length: 284aa MW: 31343.9 Da PI: 8.2132 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.4 | 6.9e-33 | 22 | 76 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl orange1.1g023389m 22 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 76 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.455 | 19 | 79 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-32 | 19 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.87E-16 | 22 | 79 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-24 | 22 | 77 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.5E-9 | 24 | 75 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.7E-19 | 122 | 167 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MERSAYVSYP YENGVMMTRD PKPRLRWTAD LHDRFVDAVT KLGGPDKATP KSVLRLMGLK 60 GLTLYHLKSH LQKYRLGQQT RRQHGADQHK ENNGGSSFVN FYNGSLATSM TSSRGDEDQG 120 PISEALKCQA EVQQRLQEQL EVQERLQMRI EAQGKYLQAI LQKAQKSLSV DSSVTGNVNA 180 EAARDQLTTF NLAISNLMES MNEQDRKGNA TEFNDMIKKG NANGSSFRVQ GDCGEREGNE 240 GDNKHKVDGG STHFDLNTKG SYDFNGIAAN GIGLGPSTML SYN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-19 | 22 | 75 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-19 | 22 | 75 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-19 | 22 | 75 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-19 | 22 | 75 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.11762 | 0.0 | flower |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00544 | DAP | Transfer from AT5G45580 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432631.1 | 0.0 | myb family transcription factor PHL11 isoform X1 | ||||
Refseq | XP_006471438.1 | 0.0 | myb family transcription factor PHL11 isoform X1 | ||||
Swissprot | C0SVS4 | 3e-84 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A067EUR2 | 0.0 | A0A067EUR2_CITSI; Uncharacterized protein | ||||
TrEMBL | V4T8I9 | 0.0 | V4T8I9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006471438.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006432631.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 1e-72 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g023389m |
Entrez Gene | 102608580 |
Publications ? help Back to Top | |||
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