PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g023291m
Common NameCISIN_1g023291mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 285aa    MW: 32301.7 Da    PI: 4.5993
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g023291mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox642.1e-2065118356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k++++t+eq++ Le+ Fe ++++  e++ +LAkklgL+ rqV vWFqNrRa++k
  orange1.1g023291m  65 KKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWK 118
                        56789************************************************9 PP

2HD-ZIP_I/II134.83e-4364155192
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekkrrl++eqv+lLE+sFe+e+kLeperK +la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++ydal ++ ++L ke+++L++e+ 
  orange1.1g023291m  64 EKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDALLSSYDSLVKENQKLKSEVV 155
                        69**************************************************************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-2050122IPR009057Homeodomain-like
PROSITE profilePS5007117.68660120IPR001356Homeobox domain
SMARTSM003892.8E-1963124IPR001356Homeobox domain
PfamPF000461.4E-1765118IPR001356Homeobox domain
CDDcd000864.19E-1865121No hitNo description
Gene3DG3DSA:1.10.10.605.5E-2266127IPR009057Homeodomain-like
PRINTSPR000317.5E-691100IPR000047Helix-turn-helix motif
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PRINTSPR000317.5E-6100116IPR000047Helix-turn-helix motif
PfamPF021832.2E-18120161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MESGRLFFDR SSCPGNMLFL GNGDSFFGGA RSMMSMEETS KRRPFFSSPD DLFDDCYYDE  60
QLPEKKRRLT AEQVHLLEKS FEAENKLEPE RKGQLAKKLG LQPRQVAVWF QNRRARWKTK  120
QLERDYDLLK SSYDALLSSY DSLVKENQKL KSEVVSLNEK IEAKEEESKE AKSDKKTETH  180
HQPTEVTNNI CGIQLQLSNN KTEDRLSSGC SGESAVVDED GPQRVVDTGD SYFGCMDPVV  240
DAAQSEEDGG SDDGRSYFSD VLVVAPDHVS NQQHEEPLGW WVWS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRARWKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446470.10.0homeobox-leucine zipper protein HAT5
SwissprotQ022833e-98HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A067FFY40.0A0A067FFY4_CITSI; Uncharacterized protein
TrEMBLA0A2H5P2Y00.0A0A2H5P2Y0_CITUN; Uncharacterized protein
TrEMBLV4U6L40.0V4U6L4_9ROSI; Uncharacterized protein
STRINGXP_006446470.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88842738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-73homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]