PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g023291m | ||||||||
Common Name | CISIN_1g023291mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 285aa MW: 32301.7 Da PI: 4.5993 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64 | 2.1e-20 | 65 | 118 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ e++ +LAkklgL+ rqV vWFqNrRa++k orange1.1g023291m 65 KKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWK 118 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 134.8 | 3e-43 | 64 | 155 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl++eqv+lLE+sFe+e+kLeperK +la++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++ydal ++ ++L ke+++L++e+ orange1.1g023291m 64 EKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDALLSSYDSLVKENQKLKSEVV 155 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.55E-20 | 50 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.686 | 60 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-19 | 63 | 124 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.4E-17 | 65 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.19E-18 | 65 | 121 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-22 | 66 | 127 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.5E-6 | 91 | 100 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.5E-6 | 100 | 116 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.2E-18 | 120 | 161 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001558 | Biological Process | regulation of cell growth | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MESGRLFFDR SSCPGNMLFL GNGDSFFGGA RSMMSMEETS KRRPFFSSPD DLFDDCYYDE 60 QLPEKKRRLT AEQVHLLEKS FEAENKLEPE RKGQLAKKLG LQPRQVAVWF QNRRARWKTK 120 QLERDYDLLK SSYDALLSSY DSLVKENQKL KSEVVSLNEK IEAKEEESKE AKSDKKTETH 180 HQPTEVTNNI CGIQLQLSNN KTEDRLSSGC SGESAVVDED GPQRVVDTGD SYFGCMDPVV 240 DAAQSEEDGG SDDGRSYFSD VLVVAPDHVS NQQHEEPLGW WVWS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 120 | RRARWKTKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00323 | DAP | Transfer from AT3G01470 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006446470.1 | 0.0 | homeobox-leucine zipper protein HAT5 | ||||
Swissprot | Q02283 | 3e-98 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A067FFY4 | 0.0 | A0A067FFY4_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5P2Y0 | 0.0 | A0A2H5P2Y0_CITUN; Uncharacterized protein | ||||
TrEMBL | V4U6L4 | 0.0 | V4U6L4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006446470.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8884 | 27 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 3e-73 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g023291m |
Publications ? help Back to Top | |||
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