PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g023215m | ||||||||
Common Name | CISIN_1g023215mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 286aa MW: 31291 Da PI: 8.3047 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41 | 3.5e-13 | 189 | 234 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + a++Le+AveY+k Lq orange1.1g023215m 189 SIAERVRRTRISDRIRKLQDLVPNM----DKQTNTADMLEEAVEYVKFLQ 234 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.983 | 183 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-16 | 186 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.07E-12 | 187 | 238 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.6E-16 | 188 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-12 | 189 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-10 | 189 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MQPTAGGSSS SSGGGGGGVG GRGELSRGGL ARLRSAPASW IDALLEEELE DPLKPNQCLT 60 QLLSSGDPVS VTAGLSLSQS QLDQVGFQRQ NSSPADLFDG YFSNYATPSS YDYVDVSPNS 120 NKRAREDNNT QFPSPTAKLN FHSHLKVEQS GQVPGGVSNL VDMDMEKLLE DSVPCRVRAK 180 RGCATHPRSI AERVRRTRIS DRIRKLQDLV PNMDKQTNTA DMLEEAVEYV KFLQKQIEIL 240 SYGRNSQSIR GDANARQKIN LRSYQICNYI YKVKVHHGLF GDNIL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.7966 | 0.0 | callus| fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00181 | DAP | Transfer from AT1G35460 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024952054.1 | 0.0 | transcription factor bHLH81 isoform X1 | ||||
Swissprot | Q9C8P8 | 9e-75 | BH080_ARATH; Transcription factor bHLH80 | ||||
TrEMBL | A0A067GZ94 | 0.0 | A0A067GZ94_CITSI; Uncharacterized protein | ||||
STRING | XP_006434680.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5104 | 25 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 1e-59 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g023215m |