PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g023169m
Common NameCISIN_1g023169mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 287aa    MW: 31541.3 Da    PI: 8.8662
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g023169mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.38.9e-193080155
                AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       s++ GVr+++ +g+WvAeI+d      k+ r +lg+f taeeAa+a+++a+  l+g
  orange1.1g023169m 30 SKFVGVRQRP-SGKWVAEIKDtT----KKIRMWLGTFETAEEAARAYDEAACLLRG 80
                       79********.7*********33....36**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-133080IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-203088IPR016177DNA-binding domain
CDDcd000187.13E-333088No hitNo description
SMARTSM003804.3E-363194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-283188IPR001471AP2/ERF domain
PROSITE profilePS5103219.9943188IPR001471AP2/ERF domain
PRINTSPR003675.0E-83243IPR001471AP2/ERF domain
PRINTSPR003675.0E-85470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGQQVQRQRP KGVSSAKIKA KSSTNPGNKS KFVGVRQRPS GKWVAEIKDT TKKIRMWLGT  60
FETAEEAARA YDEAACLLRG SNTRTNFATP VFTNSHISLK IRNLLNHKRS LKQSSPSTTT  120
STGSNTTAPI KPSTIVCDNN SSLGSSNSSN DSFLSNNSYD SFIYQGMKQD GLIFDDAYRP  180
DLSSCIGDFE ASSSTQFYHS WPFPAGLDPL PLAQGGIQLP NKHAVAAFFP EQFDIELSEF  240
EHMKVERQIS ASLYAMNGLN QHLENAFDPS HALWDLPTIV TSYCRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-143287359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-143295668ATERF1
3gcc_A1e-143295668ATERF1
5wx9_A1e-1430871371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006489001.10.0ethylene-responsive transcription factor RAP2-11
TrEMBLA0A067EKK60.0A0A067EKK6_CITSI; Uncharacterized protein
STRINGXP_006489001.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75262641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-32related to AP2 11