PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g023113m
Common NameCISIN_1g023113mg, LOC102607474
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 288aa    MW: 31964.7 Da    PI: 8.2273
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g023113mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.8e-18130184256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  orange1.1g023113m 130 RKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 184
                        788899***********************************************98 PP
2HD-ZIP_I/II125.52.5e-40130218190
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                        +kk+rlskeq+ lLEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +
  orange1.1g023113m 130 RKKLRLSKEQSLLLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-S 218
                        69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.7E-371101IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.6E-18108184IPR009057Homeodomain-like
SuperFamilySSF466899.41E-19117187IPR009057Homeodomain-like
PROSITE profilePS5007117.281126186IPR001356Homeobox domain
SMARTSM003896.2E-15128190IPR001356Homeobox domain
CDDcd000864.16E-15130187No hitNo description
PfamPF000462.9E-15130184IPR001356Homeobox domain
PROSITE patternPS000270161184IPR017970Homeobox, conserved site
SMARTSM003401.1E-25186229IPR003106Leucine zipper, homeobox-associated
PfamPF021834.4E-11186219IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGEKDDGLGL SLSLGCAARN EPSLRLNHMP LSSSQSMQNH HKRSPWTELF HSSDRNSDTR  60
SFLRGIDVNQ APTVADCEEE NGVSSPNSTV SSISGKRSER EPIGDETEAE RASCSRGSDD  120
EDGGAGDASR KKLRLSKEQS LLLEETFKEH STLNPKQKLA LAKQLNLRPR QVEVWFQNRR  180
ARTKLKQTEV DCEYLKRCCE NLTEENRRLQ KEVQELRSLK LSPQLYMNMN PPTTLTMCPS  240
CERVAVSSSS SSSSAAANGT TRLPIGPNHQ RLTPVSPWAA LPIHHRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134SRKKLRL
2178186RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.6960.0callus| fruit
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445396.10.0homeobox-leucine zipper protein ATHB-4
RefseqXP_006464444.10.0homeobox-leucine zipper protein ATHB-4 isoform X1
SwissprotP466021e-112HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A067HCG80.0A0A067HCG8_CITSI; Uncharacterized protein
TrEMBLA0A2H5NNU80.0A0A2H5NNU8_CITUN; Uncharacterized protein
TrEMBLV4U8Y00.0V4U8Y0_9ROSI; Uncharacterized protein
STRINGXP_006464444.10.0(Citrus sinensis)
STRINGXP_006445396.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.18e-84homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]