PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g023056m | ||||||||
Common Name | CISIN_1g023056mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 289aa MW: 33146.1 Da PI: 9.1342 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++ +G g+W++ ++ g+ R++k+c++rw +yl orange1.1g023056m 14 KGAWTKEEDQRLIDYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 58.7 | 1.3e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ orange1.1g023056m 67 RGNFTDEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.048 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.32E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.0E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.12E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 29.033 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-28 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.23E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0090378 | Biological Process | seed trichome elongation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 289 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLIDYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TDEEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLNRG 120 LDPQTHRPLN QIHNHNNFNK YTINNNEGII QPKNLIKPKS ESSFDDDNNT STTNNNNCST 180 SGMTADEEPP QNVQLHQQEQ KQVHSSTHYQ ENLNLELSIG LAPSNSAHSR PLQQRKQPQQ 240 QKQVVDYDKS FEVKQAVCLC WQLGFGRSEL CKNCTQNSNG FRRYITGL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-29 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434585.1 | 0.0 | transcription repressor MYB6 | ||||
Swissprot | Q38851 | 6e-97 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | A0A067GYW0 | 0.0 | A0A067GYW0_CITSI; Uncharacterized protein | ||||
TrEMBL | V4T8L1 | 0.0 | V4T8L1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006434585.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G09460.1 | 3e-92 | myb domain protein 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g023056m |