PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g023047m | ||||||||
Common Name | CISIN_1g023047mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Dof | ||||||||
Protein Properties | Length: 289aa MW: 31781.4 Da PI: 8.3654 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.4 | 8.8e-40 | 40 | 101 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+sss orange1.1g023047m 40 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS 101 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-28 | 26 | 92 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.5E-33 | 42 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.134 | 44 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 46 | 82 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MDTAQWPQEI VVKPIEEIVT NTCPKPASAA ALERKARPQK EQALNCPRCN STNTKFCYYN 60 NYSLTQPRYF CKTCRRYWTE GGSLRNIPVG GGSRKNKRSS SSSKKLPDPA TPPSHHPHQN 120 PKIHDHGEDL NLSFPAATTQ GYRSFSELVQ LPNIDNKSQI PISSSTTTTT TTTSSQQLSA 180 LELLTGISSR GLNSFMPMPV PDPNAIYAPG FPMQDFKPTL NFSLDGLGSG YGSLHHQSVQ 240 ENNGRLLFPF EDLKQVSSTS DHMEQNREHG DSSGYWTGML GGGSWWGA* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269|PubMed:20563990}. | |||||
Uniprot | TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269|PubMed:20563990}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024045573.1 | 0.0 | dof zinc finger protein DOF4.6 | ||||
Swissprot | Q8LAP8 | 2e-70 | DOF46_ARATH; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | A0A067GDE5 | 0.0 | A0A067GDE5_CITSI; Uncharacterized protein | ||||
STRING | XP_006476323.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3433 | 27 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 7e-63 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g023047m |
Publications ? help Back to Top | |||
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