PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g022964m | ||||||||
Common Name | CISIN_1g019954mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 290aa MW: 33313.9 Da PI: 4.481 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.6e-19 | 52 | 105 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ e++ +LAk lgL+ rqV +WFqNrRa++k orange1.1g022964m 52 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 105 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.5 | 5.7e-41 | 51 | 142 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ +qv++LE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L+++y++lk++ ++L ke+e+L++e+ orange1.1g022964m 51 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVL 142 69**************************************************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.01E-19 | 41 | 109 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.394 | 47 | 107 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-19 | 50 | 111 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.3E-17 | 52 | 105 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.31E-17 | 52 | 108 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-20 | 54 | 115 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 78 | 87 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 82 | 105 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 87 | 103 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.9E-16 | 107 | 149 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MTSLINSGPR SMVSFEDVHL ANGSNNRPFF RPFDRDENGD EDFDEYFHQP EKKRRLTVDQ 60 VQFLEKSFEV ENKLEPERKI QLAKDLGLQP RQVAIWFQNR RARWKTKQLE KDYDVLQNSY 120 NSLKADYDNL FKEKEKLKAE VLKLTDKLQV KEKESKNTEL PVVNKQEPPQ ISEPVADSAA 180 SEGKVCKASV VACKQEDISS AKSDIFDSDS PNYTDGVHSS LLETCDSSYV FEPEQSDLSQ 240 DEDDSLSKNV LLPPYVFPKL EETEYSDPPT NSCNFGFPIE DHAFWSWSF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 107 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.4313 | 0.0 | callus| fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR492082 | 0.0 | KR492082.1 UNVERIFIED: Citrus sinensis clone 170-1k mRNA sequence. | |||
GenBank | KR492150 | 0.0 | KR492150.1 UNVERIFIED: Citrus maxima clone 170-1 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006476659.1 | 0.0 | homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A067G8X3 | 0.0 | A0A067G8X3_CITSI; Uncharacterized protein | ||||
STRING | XP_006476659.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-46 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g022964m |