PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g022954m
Common NameCISIN_1g022072mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 290aa    MW: 31890.2 Da    PI: 6.5078
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g022954mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.33.5e-333488155
            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       kprlrWt +LH+rFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl
  orange1.1g022954m 34 KPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 88
                       79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-313189IPR009057Homeodomain-like
PROSITE profilePS512949.2853191IPR017930Myb domain
SuperFamilySSF466892.87E-163488IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-243488IPR006447Myb domain, plants
PfamPF002492.8E-73687IPR001005SANT/Myb domain
PfamPF143793.4E-16115159IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MIQREEIISR TSYHYHQNHG GGIEPCVVMT SDPKPRLRWT ADLHDRFVDA VTQLGGPSKA  60
TPKAIMRTMN VKGLTLFHLK SHLQKYRLAS YLIESSANDN SLPNFPASDM NESYEVKEAL  120
RVQMEVQSKL HLQVEAEKHL QIRQNAQQRY LAMLERACKI LTDQILGGAV VDADSEKCKG  180
LGTKMPRSYI LDSLGFYTSQ SVEVAEVQCP EELLPNLHPQ RADCSTESCL TSHESSGGLT  240
MEGSPVGGKN SILSLDTTTG SLIWGEVKMG AQEISLAREN PSGISGYGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-193491259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-193491259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-193491158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-193491158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-193491158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-193491158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-193491259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-193491259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-193491259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-193491259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-193491259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-193491259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.169270.0stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449967.10.0protein PHR1-LIKE 3 isoform X2
SwissprotQ8LAJ72e-55PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBLA0A067GTH70.0A0A067GTH7_CITSI; Uncharacterized protein
STRINGXP_006467240.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.19e-58G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]