PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g022728m | ||||||||
Common Name | CISIN_1g022728mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GATA | ||||||||
Protein Properties | Length: 294aa MW: 32024.5 Da PI: 6.6036 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.1 | 1.8e-16 | 215 | 251 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp++Rrgp+g++tLCnaCGl+++ kg+ orange1.1g022728m 215 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 251 *****99999************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.633 | 71 | 106 | IPR010399 | Tify domain |
SMART | SM00979 | 6.8E-11 | 71 | 106 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.2E-12 | 77 | 105 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.6E-15 | 139 | 181 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.106 | 139 | 181 | IPR010402 | CCT domain |
SMART | SM00401 | 2.7E-14 | 209 | 262 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 9.183 | 209 | 266 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.66E-13 | 210 | 272 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.8E-16 | 213 | 256 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.40E-15 | 214 | 257 | No hit | No description |
Pfam | PF00320 | 1.9E-14 | 215 | 251 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 215 | 242 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MDHGSNPQMQ MSDEQHAIHH VNYVPEHELH HISNGDVMDD EHDEGNGVGE SEAMEGDAPS 60 DPGSLSDNRA VSEIGDQLTL SFQGQVYVFD SVSPEKVQAV LLLLGGREVP STTPAIPIAN 120 NQNNRGLPGT PQRLSVPQRL ASLIRFREKR KERNFEKKIR YTVRKEVALR MQRNKGQFTS 180 AKSNNEDSAS AISSWGSNQS WAGDVNGSQN QDIVCRHCGI SEKSTPMMRR GPEGPRTLCN 240 ACGLMWANKG TLRDLSKAAP QAGQTSSLNK NEENGTLKAE QVIRAVGNIN GST* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.5408 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00198 | DAP | Transfer from AT1G51600 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006465167.1 | 0.0 | GATA transcription factor 28 isoform X1 | ||||
Refseq | XP_006465168.1 | 0.0 | GATA transcription factor 28 isoform X1 | ||||
Refseq | XP_024955227.1 | 0.0 | GATA transcription factor 28 isoform X1 | ||||
Swissprot | Q8H1G0 | 1e-131 | GAT28_ARATH; GATA transcription factor 28 | ||||
TrEMBL | A0A067DEI7 | 0.0 | A0A067DEI7_CITSI; Uncharacterized protein | ||||
STRING | XP_006465167.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3684 | 26 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 1e-118 | ZIM-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g022728m |