PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g022702m
Common NameCISIN_1g022702mg, LOC102629193
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 294aa    MW: 33181 Da    PI: 6.4053
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g022702mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.7e-1880133356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  orange1.1g022702m  80 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 133
                        456899***********************************************9 PP
2HD-ZIP_I/II130.18.9e-4279171193
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekkrrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+ Lkr+y+a+k+++e+L++++++L++e++
  orange1.1g022702m  79 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKADREALQAQNQKLHAEIM 170
                        69**************************************************************************************9997 PP

        HD-ZIP_I/II  93 e 93 
                        +
  orange1.1g022702m 171 A 171
                        5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-1958136IPR009057Homeodomain-like
SuperFamilySSF466899.41E-2070137IPR009057Homeodomain-like
PROSITE profilePS5007117.42775135IPR001356Homeobox domain
SMARTSM003891.1E-1778139IPR001356Homeobox domain
CDDcd000868.47E-1680136No hitNo description
PfamPF000461.2E-1580133IPR001356Homeobox domain
PRINTSPR000319.2E-6106115IPR000047Helix-turn-helix motif
PROSITE patternPS000270110133IPR017970Homeobox, conserved site
PRINTSPR000319.2E-6115131IPR000047Helix-turn-helix motif
PfamPF021836.1E-15135175IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSCNGMAFFP TNFMLQTPHE DEHQTPTSLN PILPSCAPQD FHGVASFLGK RSMSFSGIDA  60
GEEANGEDDF SDDGSQAGEK KRRLNMEQVK TLEKNFELGN KLEPERKMQL ARALGLQPRQ  120
VAIWFQNRRA RWKTKQLEKD YDLLKRQYEA VKADREALQA QNQKLHAEIM ALKSREVTES  180
INLNKETEGS CSNRSENSSD IKLDISRTPA IDSPMSTHPT SRNLFPTKST SSVRPTVAAQ  240
LFHNSSSSRP DLQCQKIEQN MQGTKDQESL SSMFCGMDDQ SGFWPWLEQH NFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127135RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.60290.0callus
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438652.10.0homeobox-leucine zipper protein ATHB-13
RefseqXP_006483203.10.0homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC031e-124ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A067H5N30.0A0A067H5N3_CITSI; Uncharacterized protein
TrEMBLA0A2H5N8S30.0A0A2H5N8S3_CITUN; Uncharacterized protein
TrEMBLV4TEZ20.0V4TEZ2_9ROSI; Uncharacterized protein
STRINGXP_006483203.10.0(Citrus sinensis)
STRINGXP_006438651.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26332770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-126HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]