PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g022591m
Common NameCISIN_1g022591mg, LOC102613469
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LBD
Protein Properties Length: 295aa    MW: 32020.6 Da    PI: 7.5516
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g022591mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.11.1e-314107199
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                        +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql
  orange1.1g022591m   4 SCNGCRVLRKGCNENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQL 95 
                        6******************************************************************************************* PP

             DUF260  88 eqlkaelallke 99 
                        +q+++e++l ++
  orange1.1g022591m  96 CQAAVEAVLKGA 107
                        ******998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381553.8E-941292IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.0973109IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCNENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIT PINSEAAAIG  120
QGPPLKAYDI RHVSKDENSP ASVDRVKTRC RVKRVVKPKA NCNKAEVNMV DELARCAEEM  180
NRSTSHESSL SHQSELAVVE NESKESDSMV SAETAETASL LFRAEPESGA KPSERVGWDS  240
CGEIGLGLEL TLGFEPVAVS RANHVVPMKK RKLEDRSTCD VDTCKVELGL DFPA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.41400.0callus| fruit| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482256.10.0LOB domain-containing protein 40
SwissprotQ9M8861e-106LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A067F6880.0A0A067F688_CITSI; Uncharacterized protein
STRINGXP_006482256.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-95LOB domain-containing protein 41